PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023927363.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 738aa MW: 79954.2 Da PI: 5.8277

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023927363.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.4e-07	314	334	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_023927363.1 314 PCPDFRK-GACRRGDMCEYAHG 334 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 738 aa Download sequence
MCSGPEQSKS SPPSASSTSP SVSTVETTSN NKDMNSLTVQ TEDSFSNLLD LAANNDVEGF 60 KQCIERDASS IDEVGLWYVR QRGSKQVVPE NRTPLMVAAT FGSVDVLEFI LVHSEADVNF 120 SCGQDKTTAL HCAASGGSLN AVDVVKLLLL AGADPNCKDA NGLRPIDVVV DVVPAKLQSM 180 RVALEELLSH NASDGSGGER HLQVSTSSSG SDSPTLSSSP EHGLPSPSEF VSSPLKYNDA 240 PIHFALEKKE YPVDPSLPDI KNIIYATDEF RMFSFKVRPC SRAYSHDWTE CPFVHPGENA 300 RRRDPRKYHY SCVPCPDFRK GACRRGDMCE YAHGVFECWL HPAQYRTRLC KDGTSCNRRV 360 CFFAHTAEEL RPLYVSTGSA VPSPRSSASA ASVMDMAAAM NLLPGSPSSI SAMSPSPFAQ 420 PMSPSANNGI SHSSMGWPQP NVPTLNLPGS NLQSSRLRSS LSARDIPPED YNMLSDFDAQ 480 QQLLSDLNCF SQCRSNSISV NRSGRSKTLT PSNLEELFSS EVSMSPRYSD AAASAVFSPT 540 HKSALLNQYQ QQQSMLSPIN TNVFSPKSVE HHLLQASFGV PSPGRMSPRS VEPISPMGSR 600 LSAFAQREKQ HQQLRSLSSR DLGTNNPASI VGSPVNSWGK WGSPNGKLDW LANGDEVGQL 660 RRSSSFELDN NGEEPDLSWV QSLVKESPPE MTKEKLAVPV SGAAASGEGL NSNSQIESVD 720 HSVLGAWLEQ MQLDQLVV

Sequence ? help Back to Top

Protein Sequence Length: 738 aa Download sequence

MCSGPEQSKS SPPSASSTSP SVSTVETTSN NKDMNSLTVQ TEDSFSNLLD LAANNDVEGF  60
KQCIERDASS IDEVGLWYVR QRGSKQVVPE NRTPLMVAAT FGSVDVLEFI LVHSEADVNF  120
SCGQDKTTAL HCAASGGSLN AVDVVKLLLL AGADPNCKDA NGLRPIDVVV DVVPAKLQSM  180
RVALEELLSH NASDGSGGER HLQVSTSSSG SDSPTLSSSP EHGLPSPSEF VSSPLKYNDA  240
PIHFALEKKE YPVDPSLPDI KNIIYATDEF RMFSFKVRPC SRAYSHDWTE CPFVHPGENA  300
RRRDPRKYHY SCVPCPDFRK GACRRGDMCE YAHGVFECWL HPAQYRTRLC KDGTSCNRRV  360
CFFAHTAEEL RPLYVSTGSA VPSPRSSASA ASVMDMAAAM NLLPGSPSSI SAMSPSPFAQ  420
PMSPSANNGI SHSSMGWPQP NVPTLNLPGS NLQSSRLRSS LSARDIPPED YNMLSDFDAQ  480
QQLLSDLNCF SQCRSNSISV NRSGRSKTLT PSNLEELFSS EVSMSPRYSD AAASAVFSPT  540
HKSALLNQYQ QQQSMLSPIN TNVFSPKSVE HHLLQASFGV PSPGRMSPRS VEPISPMGSR  600
LSAFAQREKQ HQQLRSLSSR DLGTNNPASI VGSPVNSWGK WGSPNGKLDW LANGDEVGQL  660
RRSSSFELDN NGEEPDLSWV QSLVKESPPE MTKEKLAVPV SGAAASGEGL NSNSQIESVD  720
HSVLGAWLEQ MQLDQLVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein