PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023927368.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

LBD

Protein Properties

Length: 549aa MW: 58461.8 Da PI: 3.7896

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023927368.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	37.1	9e-12	37	84	1	48
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllka 48 +CaaC + rr+Ca++C+lap+fp ++p+k +h+ FGasn +++ ++ XP_023927368.1 37 PCAACNIFRRTCAEKCPLAPCFPCTEPAKVTTAHRSFGASNTINFFQT 84 7*******************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence
MEASIDTNTS TTSSTPISHS PPSPSSPPPP VAFVKGPCAA CNIFRRTCAE KCPLAPCFPC 60 TEPAKVTTAH RSFGASNTIN FFQTQECIEF NCPRNEKPAP SLTIIDSKSL NETSVHSTSS 120 QAVLNPDSLG ENSVQIDPDL LGNISVLPLS SQTIIDPELL GETSVQPSPS QTVIDPNSLR 180 ETSVQINPDS LGETLAQPLS SQTIINQDSP GENLVQIDPN LLGNASVQPP PSQTIIDPKS 240 LEETSVQPPP SQAIMDPNSL RETSVQIDSN SLGETSAQPL PSQTIIDLDS LRENSVQINP 300 DLLGYTLVPP PSSKTVVDPE SQEETSVQPP PSQTMINPDS LGEASVQPLS SQTINDPDSL 360 GETSVQIDPN LRRNTLVQPP PSQAIDPDSQ GETLVQINPN LLGYTLVQPP PSQTVDPNSL 420 EETSMQPPLS QTVINPYSLG ETSMQPPPSQ TVIDPNSLGE TSQHIGSDSL GETLVQPAPS 480 QIVVNPDTLG EASVEIDPDS LGETSIQPPP SQPIVDPKSP PINSNIDKRN IEWQNIVLMF 540 CFTQTFPKG

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence

MEASIDTNTS TTSSTPISHS PPSPSSPPPP VAFVKGPCAA CNIFRRTCAE KCPLAPCFPC  60
TEPAKVTTAH RSFGASNTIN FFQTQECIEF NCPRNEKPAP SLTIIDSKSL NETSVHSTSS  120
QAVLNPDSLG ENSVQIDPDL LGNISVLPLS SQTIIDPELL GETSVQPSPS QTVIDPNSLR  180
ETSVQINPDS LGETLAQPLS SQTIINQDSP GENLVQIDPN LLGNASVQPP PSQTIIDPKS  240
LEETSVQPPP SQAIMDPNSL RETSVQIDSN SLGETSAQPL PSQTIIDLDS LRENSVQINP  300
DLLGYTLVPP PSSKTVVDPE SQEETSVQPP PSQTMINPDS LGEASVQPLS SQTINDPDSL  360
GETSVQIDPN LRRNTLVQPP PSQAIDPDSQ GETLVQINPN LLGYTLVQPP PSQTVDPNSL  420
EETSMQPPLS QTVINPYSLG ETSMQPPPSQ TVIDPNSLGE TSQHIGSDSL GETLVQPAPS  480
QIVVNPDTLG EASVEIDPDS LGETSIQPPP SQPIVDPKSP PINSNIDKRN IEWQNIVLMF  540
CFTQTFPKG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	7e-18	LBD family protein