PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023928043.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

AP2

Protein Properties

Length: 307aa MW: 34953.2 Da PI: 9.9888

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023928043.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.4	1.2e-15	73	132	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g XP_023928043.1 73 SRFHGVSRHRWTGRYEAHLWDkGSWNPtqkKKgKQVYLGAYDEEESAARAYDLAALKYWG 132 789****************988854566447***********************98 PP
2	AP2	51.7	2.2e-16	175	226	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ k++g XP_023928043.1 175 SVYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIKYRG 226 78**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence
MEIKNAVKSE LSPGVRRLCM MEGDTLANNK CVKWRQRDYS SAAALSCNME GDQQQKQPQP 60 DQPTTVTGVK RSSRFHGVSR HRWTGRYEAH LWDKGSWNPT QKKKGKQVYL GAYDEEESAA 120 RAYDLAALKY WGTSTFTNFL VSDYEKEIVV MRTMTKEEYL ASLRRRSSGF SRGISVYRGV 180 ARHHHNGRWE ARIGRVFGNK YLYLGTYSTQ EEAARAYDIA AIKYRGIKAV TNFDLSTYIR 240 WLRPGANSLA SQQPKSSIAS NAIANQETIE QSIFHSNSFT ENRLDTLRQQ EVLQSETSIS 300 PCTKSST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	107	PTQKKKGKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	3e-76	AP2 family protein