PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023928059.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family Whirly
Protein Properties Length: 264aa    MW: 29298.4 Da    PI: 9.9821
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023928059.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly217.99.2e-68872251139
          Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                     s+yk+kaal++++++p+f+ ldsg++k++++G++ll++a+a+++r+ydW++kq+f+ls+te+++lv l+ kesceffhdp++++s+eGkvrk+lk
  XP_023928059.1  87 SIYKGKAALTIEPRAPEFTPLDSGAFKISKDGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVCLGKKESCEFFHDPFKGKSEEGKVRKVLK 181
                     7********************************************************************************************** PP

          Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                     vePlpdGsG+f+nlsv+n+l+++++s+++Pv++ae++vl+s+++
  XP_023928059.1 182 VEPLPDGSGHFFNLSVQNKLLNVDDSIYIPVTRAEYTVLISAFN 225
                     *****************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MLRLQSLSSP LTTQNPKLHL NLSPTKRTAL KLNPNINTNI STKTSLFVVK CQQRFTSDTS  60
SPNNSSFASQ TPPAAGTFPT RFFVGHSIYK GKAALTIEPR APEFTPLDSG AFKISKDGFV  120
LLQFAPAAGV RQYDWSRKQV FSLSVTEIGS LVCLGKKESC EFFHDPFKGK SEEGKVRKVL  180
KVEPLPDGSG HFFNLSVQNK LLNVDDSIYI PVTRAEYTVL ISAFNFILPY LLGWHAFANS  240
IKPEETSLVN SANPRYGGDF EWSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-126Whirly family protein