PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023928066.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 466aa MW: 51643.5 Da PI: 6.3023

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023928066.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.1	6.5e-08	374	414	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L XP_023928066.1 374 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 414 69****************95.....5**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MDPLGWDGSQ GTNTPSLWSN HHHGLEESLV LSNSNSSLFN PIQVLQHAQT SHNYTNYERV 60 RDMIQPPAVL LDSVRAESNM TNLSHQQEAM MLREETMVAE LGAGTSLTSD QLYPSSLINR 120 PYSMNPPTCV MGGFRLPLQS QVINGLRKGQ AQATTCSLES LDCLLSATNS NTDTSAEDDG 180 ISMLFSDCRN LWNFGSGSAA SSGESENNAS NNARNNDMQH CLVNEIDETV SQSSSDLYVN 240 HGKKVQECKP VSTKRCNDQT ELKAAVPNYH CFDLLQNDHS DNSEGGFKLI SENPPKSKKP 300 RSEKQPSSSN INFQHSTSSV SSSVEEPDPE AIAQMKEMIY RAAAFRPVNL GLEVMEKPKR 360 KNVKISTDPQ TVAARQRRER ISERIRVLQR LVPGGSKMDT ASMLDEAANY LKFLRSQVKA 420 LESLGHKLDT MNYCPPADFA FSFNPSFPMQ THLPLQNPNH IHHSQS

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MDPLGWDGSQ GTNTPSLWSN HHHGLEESLV LSNSNSSLFN PIQVLQHAQT SHNYTNYERV  60
RDMIQPPAVL LDSVRAESNM TNLSHQQEAM MLREETMVAE LGAGTSLTSD QLYPSSLINR  120
PYSMNPPTCV MGGFRLPLQS QVINGLRKGQ AQATTCSLES LDCLLSATNS NTDTSAEDDG  180
ISMLFSDCRN LWNFGSGSAA SSGESENNAS NNARNNDMQH CLVNEIDETV SQSSSDLYVN  240
HGKKVQECKP VSTKRCNDQT ELKAAVPNYH CFDLLQNDHS DNSEGGFKLI SENPPKSKKP  300
RSEKQPSSSN INFQHSTSSV SSSVEEPDPE AIAQMKEMIY RAAAFRPVNL GLEVMEKPKR  360
KNVKISTDPQ TVAARQRRER ISERIRVLQR LVPGGSKMDT ASMLDEAANY LKFLRSQVKA  420
LESLGHKLDT MNYCPPADFA FSFNPSFPMQ THLPLQNPNH IHHSQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	375	380	RQRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-78	bHLH family protein