PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023928452.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family LBD
Protein Properties Length: 229aa    MW: 25069.1 Da    PI: 5.488
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023928452.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.84.9e-4071071100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++Cv+apyf+ +q +++fa+vhk+FGasnv+kll +lp ++r+da++s+ yeA ar+rdP+yG+vg i++lqqq+++l +e+
  XP_023928452.1   7 SCGACKFLRRKCTTECVFAPYFCYDQaAAHFAAVHKVFGASNVSKLLLHLPVHNRRDAANSISYEALARVRDPIYGCVGDIFALQQQVASLLEEI 101
                     6************************978******************************************************************* PP

          DUF260  95 allkee 100
                     ++++++
  XP_023928452.1 102 EVIGNQ 107
                     998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MTGIGSSCGA CKFLRRKCTT ECVFAPYFCY DQAAAHFAAV HKVFGASNVS KLLLHLPVHN  60
RRDAANSISY EALARVRDPI YGCVGDIFAL QQQVASLLEE IEVIGNQMAN LAVGVANCGS  120
SPATSNLYNG LQFSSQHDVI SPFSSQHDVL STQYYQNQQA PLLFHAGSTA ANQGFDSQMD  180
VQLPPLYGWE NQNLFDDSGL NPLGKLLEGI DEDNFKCYPW LYNSTNAKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.13e-44LBD family protein