PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023928490.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 28466.5 Da    PI: 9.0572
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023928490.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF991.9e-31957149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gkly+y
  XP_023928490.1  9 KRIENKINRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSRGKLYDY 57
                    79**********************************************9 PP
2K-box93.92.7e-31811701099
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      e++++s +qe+a Lk+++++Lq +qRhllGedL++Ls+keLq+Le+qLe +l+  R++K+++++e++eel+kke++l + n++L+ kl+
  XP_023928490.1  81 IERETQSFYQEYAMLKAKYDSLQITQRHLLGEDLGPLSVKELQSLEKQLEGALQLARQRKTQIMIEEMEELRKKERQLGDLNQQLKIKLQ 170
                     56789********************************************************************************99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAHELSVLCD AEVALIIFSS RGKLYDYGNV  60
GITKTLERYQ QSCFTPQDNS IERETQSFYQ EYAMLKAKYD SLQITQRHLL GEDLGPLSVK  120
ELQSLEKQLE GALQLARQRK TQIMIEEMEE LRKKERQLGD LNQQLKIKLQ LNEEGHTLKA  180
IQTIWGSTSA AGNTNFAFHP SPLSPMECQT EPVLQIGFTH YAQEGSSGPK NMSNEGNFIP  240
GWGLATPFKF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.17e-96MIKC_MADS family protein