PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023928493.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 238aa MW: 27042.9 Da PI: 9.3083

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023928493.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.1	1.7e-31	9	57	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gkly+y XP_023928493.1 9 KRIENKINRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSRGKLYDY 57 79**********************************************9 PP
2	K-box	84.6	2e-28	81	166	10	94
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke.lqeenkaL 94 e++++s +qe+a Lk+++++Lq +qRhllGedL++Ls+keLq+Le+qLe +l+ R++K+++++e++eel+kk k l+ee ++L XP_023928493.1 81 IERETQSFYQEYAMLKAKYDSLQITQRHLLGEDLGPLSVKELQSLEKQLEGALQLARQRKTQIMIEEMEELRKKLKIkLNEEGHTL 166 56789********************************************************************9875155555555 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAHELSVLCD AEVALIIFSS RGKLYDYGNV 60 GITKTLERYQ QSCFTPQDNS IERETQSFYQ EYAMLKAKYD SLQITQRHLL GEDLGPLSVK 120 ELQSLEKQLE GALQLARQRK TQIMIEEMEE LRKKLKIKLN EEGHTLKAIQ TIWGSTSAAG 180 NTNFAFHPSP LSPMECQTEP VLQIGFTHYA QEGSSGPKNM SNEGNFIPGW GLATPFKF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	4e-94	MIKC_MADS family protein