PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023928494.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 26801.6 Da    PI: 8.7719
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023928494.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.21.7e-31957149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gkly+y
  XP_023928494.1  9 KRIENKINRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSRGKLYDY 57
                    79**********************************************9 PP
2K-box85.51.1e-28811621091
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                      e++++s +qe+a Lk+++++Lq +qRhllGedL++Ls+keLq+Le+qLe +l+  R++K+++++e++eel+kk + ++e +
  XP_023928494.1  81 IERETQSFYQEYAMLKAKYDSLQITQRHLLGEDLGPLSVKELQSLEKQLEGALQLARQRKTQIMIEEMEELRKKLQLNEEGH 162
                     56789*********************************************************************99887765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAHELSVLCD AEVALIIFSS RGKLYDYGNV  60
GITKTLERYQ QSCFTPQDNS IERETQSFYQ EYAMLKAKYD SLQITQRHLL GEDLGPLSVK  120
ELQSLEKQLE GALQLARQRK TQIMIEEMEE LRKKLQLNEE GHTLKAIQTI WGSTSAAGNT  180
NFAFHPSPLS PMECQTEPVL QIGFTHYAQE GSSGPKNMSN EGNFIPGWGL ATPFKF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.12e-91MIKC_MADS family protein