PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023928730.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family LBD
Protein Properties Length: 229aa    MW: 25486.3 Da    PI: 8.1205
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023928730.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601201.3e-3714111198
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCaaCk++r+kC+++C+lapyfpa+++++f++vhk+FG+snv+++lk+l+ee+re+a++slv+eA++r++dPv G++g ++++ ++l++ k++ +
  XP_023928730.1  14 ACAACKHQRKKCTESCILAPYFPANRSREFQAVHKVFGVSNVTRILKNLREEDREEAVESLVWEACCRQKDPVLGSYGEYTRIFNELKNYKSQSQ 108
                     7*****************************************************************************************99988 PP

          DUF260  96 llk 98 
                     + +
  XP_023928730.1 109 KEN 111
                     766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MQRNNNGAQA ANPACAACKH QRKKCTESCI LAPYFPANRS REFQAVHKVF GVSNVTRILK  60
NLREEDREEA VESLVWEACC RQKDPVLGSY GEYTRIFNEL KNYKSQSQKE NQVMQLPGGG  120
GIGYKVVEPN LMEWSGTNGI HDKRMANGGE VVGNTLNYNN LGNGIVDSNL YGYSLDYEDK  180
VIRQETVASG GVPLQQNSSY GFNHQQYYHP AGRRADVTHF GNGSTHFGA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.11e-40LBD family protein