PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023928797.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24810.4 Da    PI: 10.2801
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023928797.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF671.8e-211964449
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      k   qvtfskRr g++KKA+EL++LC++e+a+i+fs+  k++ +
  XP_023928797.1 19 PKKNHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPAEKVFSF 64
                    5667789***********************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MVKKRASIGR QKIPIAKIPK KNHLQVTFSK RRSGLFKKAS ELCTLCGVEI AIIVFSPAEK  60
VFSFGHPEVE SILDRYLTRN PPLESSAHQL IEAHRNANVR ELNIHLTQIL NQFEAEKKRG  120
EALDQIRKSN QRQFWWEAPF NQLGLHELEQ LRASMEELKK NVVKQANKIL IGSTTNSSQF  180
LAVNGIGSSA DLFENKHTEF NASSTMSNVY NFGYGNGLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-62M-type_MADS family protein