PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023928799.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family M-type_MADS
Protein Properties Length: 216aa    MW: 24271.9 Da    PI: 9.5981
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023928799.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.31e-231864349
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    i +ks r+vtfskRr g++KKA+EL++LC+ae+a+++fs+ gk++ +
  XP_023928799.1 18 ILSKSHRHVTFSKRRSGLFKKASELCTLCGAEIAIVVFSPAGKVFSF 64
                    779*****************************************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MAKQNLSMGR KKTGCTKILS KSHRHVTFSK RRSGLFKKAS ELCTLCGAEI AIVVFSPAGK  60
VFSFGHPNVE PILDRFLTGN PNLGSKKKQL IEAHQNANVR ELNSYLTQII NQVEAEKKYG  120
EALGHIRRAN QRQCWWEAPI NELGLHELEQ LRVSIEELKK NVAKQANKIL FESTPNSLPH  180
LEMNGIEYVE FLESKLKVDA ASTIPNAYDV AYGDLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-52M-type_MADS family protein