PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023928800.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family M-type_MADS
Protein Properties Length: 220aa    MW: 24670.1 Da    PI: 10.3335
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023928800.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF671.9e-211761549
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    n+sn qvtfskRr g++KKA+EL++LC+ae+ +i+fs+  k++ +
  XP_023928800.1 17 NDSNLQVTFSKRRSGLFKKASELCTLCGAEIGIIVFSPGKKVFSF 61
                    99************************************9999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MRKSKGRQKI EMVKMPNDSN LQVTFSKRRS GLFKKASELC TLCGAEIGII VFSPGKKVFS  60
FGHPCVETII DRFLTRNPPQ NSGTLQLIEA HRNASVREHN VQLTQLTSQL EAERKRGEAL  120
NRMRKAGQAE HWWEAPIEGL GLQQLEQLKG SLEELKKNVA KQADRLLIQN SNPPQFFGAG  180
NSNHGVIPFD TTIPYDTKNV GFSGHAMPHA YNHGYGRGFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-59M-type_MADS family protein