PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023929074.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family LBD
Protein Properties Length: 234aa    MW: 25516.7 Da    PI: 7.267
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023929074.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.27.7e-40371381101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v+++l+lqqq+++l+ael
  XP_023929074.1  37 PCGACKFLRRKCINGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVHQRHDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAEL 131
                     7***********************9989******************************************************************* PP

          DUF260  95 allkeel 101
                     a+++++l
  XP_023929074.1 132 AMVQTQL 138
                     **99885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MAETRGGDST SRNRRKGMGK RTMATVEAEP VVAAMAPCGA CKFLRRKCIN GCIFAPHFGS  60
DQGAARFAAV HKVFGASNVS KLLLHIPVHQ RHDAVVTISY EAQARLSDPV YGCVSTVLAL  120
QQQVASLQAE LAMVQTQLIN SRFAFANSLQ NSQQQQQRQN IAVLQPAYSN NSSASNNLIS  180
MSAFTSNFDI VAETAPSPHS LEPLQLSRPS QDEEEDEEES HIPHVFGNEI LHRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.19e-58LBD family protein