PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023929235.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

LBD

Protein Properties

Length: 277aa MW: 31303.9 Da PI: 5.3339

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023929235.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125	3.7e-39	21	120	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l++ ++++am+++++++++ra+dPv G++++i++lq+ +e kael+ XP_023929235.1 21 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLNQPDKDEAMRTIIFQSDVRANDPVGGCYRIIRELQRLIEYNKAELD 115 7*********************************************************************************************9 PP DUF260 96 llkee 100 + ++ XP_023929235.1 116 IVLHQ 120 88776 PP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence
MNINNNNTTT TTRHGNGTTQ ACAACKYQRR KCAPDCILAP YFPHDRQRQF LNAHKLFGVS 60 NITKIIKNLN QPDKDEAMRT IIFQSDVRAN DPVGGCYRII RELQRLIEYN KAELDIVLHQ 120 LAICRAQAHQ QQMSEATDPT INCEMVGVDP LSSYNNALQY HYLGPPQQEQ FFVVNNHLQE 180 DVNAWTTVQD SASTLSSLHV NKHGPDSECD DVKPVFDVSC ERNEIKFEPE ELIARSDEVT 240 LRIDNATLKE DDGSIQQAQD HDLKGAATLF TLTNCNN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	3e-71	LBD family protein