PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023929344.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family HD-ZIP
Protein Properties Length: 266aa    MW: 30413.6 Da    PI: 4.4126
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023929344.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.71.3e-2067120356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++++eq++ Le+ Fe ++++  e++++LAkklgL+ rqV vWFqNrRa++k
  XP_023929344.1  67 KKRRLSPEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 120
                     56789************************************************9 PP
2HD-ZIP_I/II134.83e-4366157192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrls eqv+lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+l ++ ++L ke+e+L++e+ 
  XP_023929344.1  66 EKKRRLSPEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDDLKSSYDSLYSNYDTLVKEHEKLKSEVV 157
                     69**************************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MMESGRLFFD PSGCRGSNML FLGNGDNVFR GGRAIMSMEE SSKRRSFFSS PDELFDEEYY  60
DEQLPEKKRR LSPEQVHLLE KSFETENKLE PERKTQLAKK LGLQPRQVAV WFQNRRARWK  120
TKQLERDYDD LKSSYDSLYS NYDTLVKEHE KLKSEVVSLN EKLQAKGVAG ADISAQKAEP  180
LPGDITNVSA LQFSVKVEDR LSCGSAVVDE DGPQILDTGD SYFPSDNYPA EDDGSDDGHS  240
YFCNVFVAAE PQHQEDEEPL EWLEWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115123RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.14e-74HD-ZIP family protein