PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023929345.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

HD-ZIP

Protein Properties

Length: 231aa MW: 26621.3 Da PI: 4.3378

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023929345.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65	1e-20	32	85	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq++ Le+ Fe ++++ e++++LAkklgL+ rqV vWFqNrRa++k XP_023929345.1 32 KKRRLSPEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 85 56789************************************************9 PP
2	HD-ZIP_I/II	135.2	2.2e-43	31	122	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrls eqv+lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+l ++ ++L ke+e+L++e+ XP_023929345.1 31 EKKRRLSPEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDDLKSSYDSLYSNYDTLVKEHEKLKSEVV 122 69**************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence
MSMEESSKRR SFFSSPDELF DEEYYDEQLP EKKRRLSPEQ VHLLEKSFET ENKLEPERKT 60 QLAKKLGLQP RQVAVWFQNR RARWKTKQLE RDYDDLKSSY DSLYSNYDTL VKEHEKLKSE 120 VVSLNEKLQA KGVAGADISA QKAEPLPGDI TNVSALQFSV KVEDRLSCGS AVVDEDGPQI 180 LDTGDSYFPS DNYPAEDDGS DDGHSYFCNV FVAAEPQHQE DEEPLEWLEW P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	88	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	5e-63	HD-ZIP family protein