PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023929442.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 422aa MW: 48636.1 Da PI: 7.4529

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023929442.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.5	3.5e-19	179	225	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd ll+++vkq+G + W+ Ia++++ gR +kqc++rw+++l XP_023929442.1 179 KGQWTVEEDRLLIQLVKQYGVKKWSYIAQMLP-GRIGKQCRERWHNHL 225 799***************************.***********97 PP
2	Myb_DNA-binding	56.4	6.9e-18	231	273	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eEd+ l++a+++ G++ W+ Ia++++ gRt++++k++w+ XP_023929442.1 231 KDTWSEEEDKVLIQAHAEIGNK-WAEIAKRLP-GRTENSIKNHWN 273 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MELDTMFREN PASQPILLSD NYLKSYMKDD FSFEAPSSKG FLQDFHYLDQ FQTNGSLSNP 60 IFGVQTQCYG CTSSDFDIYE CKPFMDNGGH GHVMENFQGG GYLNHPQRNP IDIMGSDRSH 120 MVVTTCQDII KPLNFVVPDE VSCITAENGY YKKIGMNKNR ALPTTKKPQK GRKKSNVVKG 180 QWTVEEDRLL IQLVKQYGVK KWSYIAQMLP GRIGKQCRER WHNHLRPDIK KDTWSEEEDK 240 VLIQAHAEIG NKWAEIAKRL PGRTENSIKN HWNATKRRQY SKRKCRSKYP RGSLLQEYIK 300 GLNLDPSNMM QNRRKTSSSN ATANNTTIKT PTQLPQSTDQ FCPNARLVPN YDFNEVPDFY 360 FDENMFQESC SIDSLLDDMH CAPVVVDKND FDMDIPVDMT PVVDCDVKKE LDLVEMMSQL 420 QK

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MELDTMFREN PASQPILLSD NYLKSYMKDD FSFEAPSSKG FLQDFHYLDQ FQTNGSLSNP  60
IFGVQTQCYG CTSSDFDIYE CKPFMDNGGH GHVMENFQGG GYLNHPQRNP IDIMGSDRSH  120
MVVTTCQDII KPLNFVVPDE VSCITAENGY YKKIGMNKNR ALPTTKKPQK GRKKSNVVKG  180
QWTVEEDRLL IQLVKQYGVK KWSYIAQMLP GRIGKQCRER WHNHLRPDIK KDTWSEEEDK  240
VLIQAHAEIG NKWAEIAKRL PGRTENSIKN HWNATKRRQY SKRKCRSKYP RGSLLQEYIK  300
GLNLDPSNMM QNRRKTSSSN ATANNTTIKT PTQLPQSTDQ FCPNARLVPN YDFNEVPDFY  360
FDENMFQESC SIDSLLDDMH CAPVVVDKND FDMDIPVDMT PVVDCDVKKE LDLVEMMSQL  420
QK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	1e-102	MYB family protein