PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023929543.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family YABBY
Protein Properties Length: 182aa    MW: 20168.8 Da    PI: 8.4123
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023929543.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2108.5e-6541532170
           YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 
                     d++ sse+vCyv+CnfCntilavsvP +slf++vtvrCGhC++llsvn+  ++q+++ ++                ++++++s +  ++s+ ++ 
  XP_023929543.1   4 DMMASSERVCYVHCNFCNTILAVSVPCSSLFNMVTVRCGHCANLLSVNMGATVQAVPPQDP---------------QKQHISSDDCGSSSKCNKF 83 
                     57889**********************************************9999999885...............4556666666666666666 PP

           YABBY  97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     s+++     ++e pr+ p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  XP_023929543.1  84 SAFE---AVEHEQPRMAP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 153
                     6644...55677788888.9****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    
MSLDMMASSE RVCYVHCNFC NTILAVSVPC SSLFNMVTVR CGHCANLLSV NMGATVQAVP  60
PQDPQKQHIS SDDCGSSSKC NKFSAFEAVE HEQPRMAPIR PPEKRQRVPS AYNRFIKEEI  120
QRIKASNPDI SHREAFSTAA KNWAHFPHIH FGLKLDGNNK QGKLDQALAG TDQGSQKSNG  180
FY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-86YABBY family protein