PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023929587.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 136aa MW: 15610.9 Da PI: 10.6923

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023929587.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.8	2.9e-09	2	33	17	48
HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 17 kqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++G g+W++ +++ g+ R++k+c++rw +yl XP_023929587.1 2 EEHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 33 89****************************97 PP
2	Myb_DNA-binding	55.3	1.5e-17	39	84	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l XP_023929587.1 39 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 84 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence
IEEHGHGSWR ALPAKAGLQR CGKSCRLRWT NYLRPDIKRG KFSLQEEQTI IQLHALLGNR 60 WSAIATHLPK RTDNEIKNYW NTHLKKRLAK MGIDPLTHKP KNDTLLSNDG QTKNAANLSH 120 MAQWESARLE AEARLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01140.1	6e-88	MYB family protein