PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023929738.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

GATA

Protein Properties

Length: 1112aa MW: 121430 Da PI: 7.1866

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023929738.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	52.2	8.2e-17	992	1023	1	32
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 C+nC+t+ Tp WRrgp+g++ LCn+CGl+++k XP_023929738.1 992 CANCHTKVTPEWRRGPSGQRDLCNSCGLRWAK 1023 ******************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 1112 aa Download sequence
MYSYGYHEDG YDSNGMGQTE DGSPGNYMLG QDVAMTGGQS LDEIVNQSAK IIGRQSMPPQ 60 QLSQQYSASP SLDQSLGADV RQGTTMMDFG GTSPVVQTGP FQFNSNIMDQ GGGMMVSPMQ 120 MQMSSQTTQM PQAQSSTSHR GSADNSQPSG DLTNLNNNYT NNYNPMRHSS GTFSASPAHQ 180 RSSIDMNMGV SQLNHNLGLS MEYGADQDMN TPMSGGGINM DMFSPAQYSN QMMNSPMQQA 240 PSHGVSQGSN VQQRQMSQES ASRSASIATG QLHPPSRTHS MHTNSEKSPT QLGPALNVSG 300 SLLAQQIGHN QFQTSSPQQN QAHNRSLNSD QYQSYQQQQE HSRTGSAQDH DMQQTTSDAP 360 STGFDGINGP VPINLTSYNP NNQGFQWETP EGGWPSTLVG RPHAQSTYKN AYSSTGFDML 420 GVLMRVATRP NPQINIGAVD LSCAFVVCDA EKDDTPIVYC SDNFERLTGY TKHMILGRNC 480 RFLQSPDGQV SPGIRRKYVD DDSVLYLKNM TNLQREAQIS LINYRRGGQP FMNLLTMIPI 540 TWDSDKIKFF VGFQVDLVEQ PNAVTDKNAD GSYSINYQRG MAMPPYVMPA SESVSKTELG 600 QTVSREDVST LLSTVGNGES EYAKRIWDKV LLENTDDVVH VLSLKGLFLW ISPSSARVLE 660 YEPSELMGTA LSSVCHPSDI VPVTRELKDT SSAASVNVVF RIRRKVSGYM WFEGHGSLHT 720 EQGKGRKSII MVGRERPVYT LSKKDLEGLG GIGESELWSK ISTSGMFLFV SSNVRQLLDR 780 QPDELVGISI QTLMRSESKA DFGRILEHAR TGMKASVKHE MINRRGQVLS AYTTVYPGDA 840 QEGQKPTFVL AQTRLIKFSR GAQMVRNNSG YSKSERNPSE SALATGTISA RQGGSGTSPN 900 SAVSSRHYRN TDGTAATYAG QFGLVIGHQD QSLASEDNLF DELKTTKSSS WQYEIRQLEK 960 RNRILAEEVQ SLIAAKKKRK RRKGAGNMQK DCANCHTKVT PEWRRGPSGQ RDLCNSCGLR 1020 WAKINGRVSP RTNSVYSSGA ASDKASKASA SPLHVKSEFP TPAPTPSAVP TSEGQEGQPP 1080 PSKAVRLSGD HSASMEGASG VPDSIREDVE PD

Sequence ? help Back to Top

Protein Sequence Length: 1112 aa Download sequence

MYSYGYHEDG YDSNGMGQTE DGSPGNYMLG QDVAMTGGQS LDEIVNQSAK IIGRQSMPPQ  60
QLSQQYSASP SLDQSLGADV RQGTTMMDFG GTSPVVQTGP FQFNSNIMDQ GGGMMVSPMQ  120
MQMSSQTTQM PQAQSSTSHR GSADNSQPSG DLTNLNNNYT NNYNPMRHSS GTFSASPAHQ  180
RSSIDMNMGV SQLNHNLGLS MEYGADQDMN TPMSGGGINM DMFSPAQYSN QMMNSPMQQA  240
PSHGVSQGSN VQQRQMSQES ASRSASIATG QLHPPSRTHS MHTNSEKSPT QLGPALNVSG  300
SLLAQQIGHN QFQTSSPQQN QAHNRSLNSD QYQSYQQQQE HSRTGSAQDH DMQQTTSDAP  360
STGFDGINGP VPINLTSYNP NNQGFQWETP EGGWPSTLVG RPHAQSTYKN AYSSTGFDML  420
GVLMRVATRP NPQINIGAVD LSCAFVVCDA EKDDTPIVYC SDNFERLTGY TKHMILGRNC  480
RFLQSPDGQV SPGIRRKYVD DDSVLYLKNM TNLQREAQIS LINYRRGGQP FMNLLTMIPI  540
TWDSDKIKFF VGFQVDLVEQ PNAVTDKNAD GSYSINYQRG MAMPPYVMPA SESVSKTELG  600
QTVSREDVST LLSTVGNGES EYAKRIWDKV LLENTDDVVH VLSLKGLFLW ISPSSARVLE  660
YEPSELMGTA LSSVCHPSDI VPVTRELKDT SSAASVNVVF RIRRKVSGYM WFEGHGSLHT  720
EQGKGRKSII MVGRERPVYT LSKKDLEGLG GIGESELWSK ISTSGMFLFV SSNVRQLLDR  780
QPDELVGISI QTLMRSESKA DFGRILEHAR TGMKASVKHE MINRRGQVLS AYTTVYPGDA  840
QEGQKPTFVL AQTRLIKFSR GAQMVRNNSG YSKSERNPSE SALATGTISA RQGGSGTSPN  900
SAVSSRHYRN TDGTAATYAG QFGLVIGHQD QSLASEDNLF DELKTTKSSS WQYEIRQLEK  960
RNRILAEEVQ SLIAAKKKRK RRKGAGNMQK DCANCHTKVT PEWRRGPSGQ RDLCNSCGLR  1020
WAKINGRVSP RTNSVYSSGA ASDKASKASA SPLHVKSEFP TPAPTPSAVP TSEGQEGQPP  1080
PSKAVRLSGD HSASMEGASG VPDSIREDVE PD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	976	982	KKKRKRR
2	977	983	KKKRKRR
3	977	982	KKRKRR
4	978	983	KRKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36620.1	4e-09	GATA family protein