PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024958794.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 212aa    MW: 24096.6 Da    PI: 6.7819
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024958794.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.2e-13250455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    +h ++Er+RR+++N+ ++ Lr+llP++   + k+ + a+i   A+e++k+L+
  XP_024958794.1  2 NHIAVERNRRKQMNHHLAALRSLLPES---YLKRGDQASIIGGAIEFVKELE 50
                    799************************...9******************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MNHIAVERNR RKQMNHHLAA LRSLLPESYL KRGDQASIIG GAIEFVKELE HLLQSLEAQK  60
FLSIRQQDPT IHDENSNNPT QECEIPQLPL HFQKFFTCPQ YTWSSIPNTN ASKSNATMAD  120
IEVNLVQTHA NLRILSRKRL KQLSKMVVFL QTCYLSILHL NVTTFDPFVL YSITLKVEEG  180
CCLNSADEIA GAVHQILGLI EQEATLCIDS RD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-60bHLH family protein