PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024958995.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 249aa    MW: 28509.2 Da    PI: 5.6444
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024958995.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.7e-17101151256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +++G+ +++ +g+W+AeI+dp +   r r++lg+ +taeeAa+a+++a+ kl g+
  XP_024958995.1 101 KFRGIQQRP-WGKWAAEIMDPAT---RERWWLGTRDTAEEAARAYDNAAIKLCGH 151
                     89*******.**********954...4************************9886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MEVLTMTEKF FGQEKSTCPR LVRISMTDPY ATDSSANEND DHFGRWHVNK YVNEINIQTS  60
CKTTMMPVND NMMTTRNRPY ALEAKQKSMK KKRTAADNVR KFRGIQQRPW GKWAAEIMDP  120
ATRERWWLGT RDTAEEAARA YDNAAIKLCG HGAVKNFIMP LVLENPRPVN VTSMFDHDSS  180
LKLHNLPFGE APPFDFQSFD LIQFGDEVLF YNMHDDFGIT NPNQFDDFAT IPFVDDFIPD  240
IGCGSSSTL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.17e-27ERF family protein