PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024959054.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family YABBY
Protein Properties Length: 135aa    MW: 14747.4 Da    PI: 6.0482
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024959054.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY70.18.2e-221088281
           YABBY  2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeen 81
                    dv  +seq+ y++CnfCn +lavsvP +slf +vtvrC  Ct++  +n+ +a++l+ + s    +++++   ++++ + n
  XP_024959054.1 10 DVAATSEQLYYIHCNFCNIVLAVSVPCSSLFDTVTVRCENCTNMWPLNVGMAATLQQSFSGSTSTFQDSSSPHNQQGS-N 88
                    67889***********************************************98888777655555554333333222.2 PP
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    
MSSSGTICTD VAATSEQLYY IHCNFCNIVL AVSVPCSSLF DTVTVRCENC TNMWPLNVGM  60
AATLQQSFSG STSTFQDSSS PHNQQGSNYT SPNYRVDLGF SSDCNNMIMP TTLIRPHTPS  120
TNNGKEINNH RSFIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.14e-20YABBY family protein