PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024959078.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 265aa MW: 30195.3 Da PI: 6.1676

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024959078.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47	6e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l d++k++G g W+ + + g+ R++k+c++rw++yl XP_024959078.1 14 KGAWTASEDRILSDYIKLHGEGKWRQLPIKAGLQRCGKSCRLRWLNYL 61 79********************************************97 PP
2	Myb_DNA-binding	50.8	3.9e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + eE++l+++++k+lG++ W++Ia++++ gRt++++k++w++ XP_024959078.1 67 RGNISCEEEDLIIRLHKLLGNR-WSLIAKRLP-GRTDNEIKNYWNST 111 677788**************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence
MGKSPCCSKI WLNKGAWTAS EDRILSDYIK LHGEGKWRQL PIKAGLQRCG KSCRLRWLNY 60 LKPDVKRGNI SCEEEDLIIR LHKLLGNRWS LIAKRLPGRT DNEIKNYWNS TLAKKVCELH 120 NDSYINNRKD KECVNETDLT HIKVVRPKGL RCPKTQFSLH PPPATTNVDE IEDPANAKST 180 DQSSLIYHED NDNPTCFNLD DIDMAMEEGC LLSDLFNMNF TNDQMVKGDD MVSGPSTMDA 240 THSLSKEILD FASIPEIEGE WLSLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	1e-59	MYB family protein