PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024959176.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 1409aa MW: 154295 Da PI: 6.6384

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024959176.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.8	2.8e-09	735	778	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT eE e+++d ++G++ +++Ia+ + ++t +c+++++ky XP_024959176.1 735 NPWTIEEKEIFLDKYSLFGKN-FRKIASFLE-HKTIADCVEFYYKY 778 58***************99.*****.***********9 PP
2	Myb_DNA-binding	23.8	1.1e-07	951	990	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W eE + +av+ +G++ ++ I+r+m +R+ +c+ ++ XP_024959176.1 951 WMDEEKSSFMQAVRSYGKD-FSMISRYMR-TRSTDECRVFFS 990 999************99.*****.******8775 PP

Sequence ? help Back to Top
Protein Sequence Length: 1409 aa Download sequence
MPPEPLPFDR KDFFKARKPS SSDPVGTVPP QWREPPTTPS NHNNRGSSSS CRLAGGGPSD 60 FRQPFSGYDK AVSGGFHVTT VESGSREYKY CKNDNSKENN TNNSRMSVAL GSQKPLKGGN 120 SWATTLSLNG NSYPLTDSVN SWEQLQLNDQ HAKKNGGEVS TTGSQGLDKE DSLDWKPLKW 180 IRSGSLSSRG SGFSHSSSCK IIRLDSLDTK IDAQLGNSTP VQSPSGDVVL CLTPRTPADE 240 VSSRKKPRLG WGEGLAKYEK KKVGPYDIVD KESGARNGMV DGVSCSEPLL SSPSNLLDKS 300 PSLTGCSESA SPTTPYSFAC SSSPGLEEKD GSIKAATVDN GFNLSSSLEE LLQSDESGAP 360 GNGFVESTAM DKLQVWKADI SRTLEITETE IDSLEHELKL LISDGGSCPF PAASSSSPTE 420 RNNKNPGKRF VHLPLKIISS VDMLMEKADG FLEERTGAED LDRKSPGTAT SKLVKPLALC 480 NNVKHPDAVE RKDSPSNLDI RSEQAKFPPH HANDDMVGVV NSCRDGSQVP TGSGHTIPIG 540 GDVYYGSENK LCDMILASNR DLANRASDAF SKMLPTTHLR TNISSATDVS LIKKKMVMRK 600 RFIKFKERVI TLKFRALQYP WKEDLRLLSI KRFSAKSQKK FELSSRMGYA DHQKHDSSSH 660 SRLSSAGSLS LVPTTEIVDY VKKLLSDSQI KIYKNTLKMP SFMLDKREYI ASRFISDNGL 720 LENPIDVEKE RSIVNPWTIE EKEIFLDKYS LFGKNFRKIA SFLEHKTIAD CVEFYYKYHK 780 SDFFQKTKKN KKFANGKSYT ANIYLVTSGK RLNRDTNATS LDMLGAASAT VANMDDGMQK 840 QHKYTANCYV GSSSDKKLPG GDVGILERSN NFAMSCNEQE TAAADVLAGI CGSMSSDALS 900 SCITSSVEPG RRCQKLGGSS LHLTPEGTLD DVDEDTCSDN SCGEDMDPCD WMDEEKSSFM 960 QAVRSYGKDF SMISRYMRTR STDECRVFFS KARKCLGLDV IHLEAGSEGT TGANQGGGSD 1020 HEDACGSVVS HDKSSSECNK IDLHSSDIRE EHAESDRNGC REPELMLENL VSHAEKKPQV 1080 ELIGESGCSN RNLEGAADSE ATETTNAHQN MYSEGSVEEM NDYSSATGVA KVSAKICRQG 1140 IRESEHPLPS FNGNTSSSVR RLSSCPAEDL NFASHYSRGT CLDLSIDRGN NMELNASSEN 1200 GFLMLNFFPK DPGFGKTLSQ DDVSSRRLSF RKSGDQRCSS MDGYHLHLSK RSLLDCEESS 1260 HILPVSIPSA KEGKNGSLSW HEPQSNFKLE EMDCSVSQEP RQSCSLERPR RSGDVKLFGQ 1320 ILTNLSGSNA NGSARESSSI GKPNGGRLFN LEFDNDKKNV PPSRSYGFWD GNRIQTLPDS 1380 AMLLAKYPAA FSNTSSSKFD SCSLNQTSD

Sequence ? help Back to Top

Protein Sequence Length: 1409 aa Download sequence

MPPEPLPFDR KDFFKARKPS SSDPVGTVPP QWREPPTTPS NHNNRGSSSS CRLAGGGPSD  60
FRQPFSGYDK AVSGGFHVTT VESGSREYKY CKNDNSKENN TNNSRMSVAL GSQKPLKGGN  120
SWATTLSLNG NSYPLTDSVN SWEQLQLNDQ HAKKNGGEVS TTGSQGLDKE DSLDWKPLKW  180
IRSGSLSSRG SGFSHSSSCK IIRLDSLDTK IDAQLGNSTP VQSPSGDVVL CLTPRTPADE  240
VSSRKKPRLG WGEGLAKYEK KKVGPYDIVD KESGARNGMV DGVSCSEPLL SSPSNLLDKS  300
PSLTGCSESA SPTTPYSFAC SSSPGLEEKD GSIKAATVDN GFNLSSSLEE LLQSDESGAP  360
GNGFVESTAM DKLQVWKADI SRTLEITETE IDSLEHELKL LISDGGSCPF PAASSSSPTE  420
RNNKNPGKRF VHLPLKIISS VDMLMEKADG FLEERTGAED LDRKSPGTAT SKLVKPLALC  480
NNVKHPDAVE RKDSPSNLDI RSEQAKFPPH HANDDMVGVV NSCRDGSQVP TGSGHTIPIG  540
GDVYYGSENK LCDMILASNR DLANRASDAF SKMLPTTHLR TNISSATDVS LIKKKMVMRK  600
RFIKFKERVI TLKFRALQYP WKEDLRLLSI KRFSAKSQKK FELSSRMGYA DHQKHDSSSH  660
SRLSSAGSLS LVPTTEIVDY VKKLLSDSQI KIYKNTLKMP SFMLDKREYI ASRFISDNGL  720
LENPIDVEKE RSIVNPWTIE EKEIFLDKYS LFGKNFRKIA SFLEHKTIAD CVEFYYKYHK  780
SDFFQKTKKN KKFANGKSYT ANIYLVTSGK RLNRDTNATS LDMLGAASAT VANMDDGMQK  840
QHKYTANCYV GSSSDKKLPG GDVGILERSN NFAMSCNEQE TAAADVLAGI CGSMSSDALS  900
SCITSSVEPG RRCQKLGGSS LHLTPEGTLD DVDEDTCSDN SCGEDMDPCD WMDEEKSSFM  960
QAVRSYGKDF SMISRYMRTR STDECRVFFS KARKCLGLDV IHLEAGSEGT TGANQGGGSD  1020
HEDACGSVVS HDKSSSECNK IDLHSSDIRE EHAESDRNGC REPELMLENL VSHAEKKPQV  1080
ELIGESGCSN RNLEGAADSE ATETTNAHQN MYSEGSVEEM NDYSSATGVA KVSAKICRQG  1140
IRESEHPLPS FNGNTSSSVR RLSSCPAEDL NFASHYSRGT CLDLSIDRGN NMELNASSEN  1200
GFLMLNFFPK DPGFGKTLSQ DDVSSRRLSF RKSGDQRCSS MDGYHLHLSK RSLLDCEESS  1260
HILPVSIPSA KEGKNGSLSW HEPQSNFKLE EMDCSVSQEP RQSCSLERPR RSGDVKLFGQ  1320
ILTNLSGSNA NGSARESSSI GKPNGGRLFN LEFDNDKKNV PPSRSYGFWD GNRIQTLPDS  1380
AMLLAKYPAA FSNTSSSKFD SCSLNQTSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-103	MYB family protein