PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024959256.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 291aa MW: 32818.8 Da PI: 6.6683

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024959256.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.4	5e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l+d++k++G g W+ + + g+ R++k+c++rw++yl XP_024959256.1 14 RGSWTASEDKILADYIKLHGEGKWRQLPIKAGLQRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	47.2	5.1e-15	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ XP_024959256.1 67 RGNISCDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 5677779*************.*****.**********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MGRSPCCSKI GLNRGSWTAS EDKILADYIK LHGEGKWRQL PIKAGLQRCG KSCRLRWLNY 60 LKPDIKRGNI SCDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLAKKVHDQL 120 HHDHNSHVQS YQESPLKKRK DKECVINETD DETNEKSNVV RTKAVRCSKT HFSPHPPPTT 180 SNVVEIKDPK PTDEMFPSFY HEEDIINPSS SFSLDVNMGE GSCNLSGLFN MDFTDSFNLN 240 DDQMTKGGDD MVSAGSSTVA ATDATTQAWS KEILDYFTSI PEIGGEWLSS L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	1e-60	MYB family protein