PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024959327.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NF-YC
Protein Properties Length: 241aa    MW: 27296.8 Da    PI: 4.8858
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024959327.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC179.43.3e-56621651101
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql++fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl
  XP_024959327.1  62 QLQNFWANQyqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFL 156
                     89******9999*********************************************************************************** PP

           NF-YC  93 vdivprdel 101
                     vdivpr++l
  XP_024959327.1 157 VDIVPREDL 165
                     ******987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MDQQEHGQGS SGQMPYGVAP YPPNQIQTPQ SVGLPSPPTQ LAQQQLAYQH IHQQQQQQLH  60
QQLQNFWANQ YQEIEQTTDF KNHSLPLARI KKIMKADEDV RMISAEAPVI FARACEMFIL  120
ELTLRSWNHT EENKRRTLQK NDIAAAITRT DIFDFLVDIV PREDLKDEVL ASTIPRGGPL  180
PVGPPTEGLP YYYMPPPQVG GSGMYMGKPV DPQALYGQQP NPYMAQPLWP QQQEQEPQGD  240
A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135141RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.31e-82NF-YC family protein