PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024959634.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 529aa MW: 58136 Da PI: 7.1269

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024959634.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0016	51	72	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C C+k Fs+ L H+r H XP_024959634.1 51 VCLECKKEFSSGKALGGHMRIH 72 6*******************99 PP
2	zf-C2H2	13.7	0.00018	120	138	3	21
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C++Cgk F++ +L H+r XP_024959634.1 120 CSICGKIFPSMKSLFGHMR 138 ******************8 PP
3	zf-C2H2	13.3	0.00025	369	391	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+ksF+++ L H ++H XP_024959634.1 369 YKCTTCNKSFTSHQALGGHRSSH 391 9***************9999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence
MEKITGDEDR QGDHTMIGSP LSEGKMVIKL RIPKLTAAME DERSSETTKR VCLECKKEFS 60 SGKALGGHMR IHVQAANRNT FLKPSKTTKF KKSGQDFNNG DHGSKPNYKN SVNGEGKPIC 120 SICGKIFPSM KSLFGHMRCH PERLWRGIVP PPDTPTTALY RQRSNIVDDD GDEVVDLTKF 180 LRGWTVTERR GRRALKAADE DEVLREAVED LMSLAHGDHP TMAESDVSQR QLRAEVFEGT 240 NSNSPTNKDN KIDEKSPGDS NNGKAFMEEE IEGKPVAKVE VDGGGGMNMI IKNFSDNESD 300 SRNTNEQMMI SCKYKKNLSN NPNKIKKRKK MKLMMELEQG FTQETVGGHP PLPLTSSMAS 360 RHEQPESKYK CTTCNKSFTS HQALGGHRSS HNKSKITPTD HHQIDQEDDY DSSVMNQTSD 420 NVEKEVEFAG DAMVAASGLH QCKICDKIFP TGQALGGHKR CHWTGAIEAQ APSSQVTSTG 480 EAASQSGGGR RRILDFDLNE VPPAAMMEDE GGGGGGTGYA SSSYNSNMG

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence

MEKITGDEDR QGDHTMIGSP LSEGKMVIKL RIPKLTAAME DERSSETTKR VCLECKKEFS  60
SGKALGGHMR IHVQAANRNT FLKPSKTTKF KKSGQDFNNG DHGSKPNYKN SVNGEGKPIC  120
SICGKIFPSM KSLFGHMRCH PERLWRGIVP PPDTPTTALY RQRSNIVDDD GDEVVDLTKF  180
LRGWTVTERR GRRALKAADE DEVLREAVED LMSLAHGDHP TMAESDVSQR QLRAEVFEGT  240
NSNSPTNKDN KIDEKSPGDS NNGKAFMEEE IEGKPVAKVE VDGGGGMNMI IKNFSDNESD  300
SRNTNEQMMI SCKYKKNLSN NPNKIKKRKK MKLMMELEQG FTQETVGGHP PLPLTSSMAS  360
RHEQPESKYK CTTCNKSFTS HQALGGHRSS HNKSKITPTD HHQIDQEDDY DSSVMNQTSD  420
NVEKEVEFAG DAMVAASGLH QCKICDKIFP TGQALGGHKR CHWTGAIEAQ APSSQVTSTG  480
EAASQSGGGR RRILDFDLNE VPPAAMMEDE GGGGGGTGYA SSSYNSNMG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	325	332	IKKRKKMK
2	326	330	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	3e-23	C2H2 family protein