PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024959747.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 498aa MW: 54267.9 Da PI: 6.3628

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024959747.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.2	2.7e-31	253	311	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kgs+fpr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+ XP_024959747.1 253 TDGCQWRKYGQKMAKGSPFPRAYYRCTMAvGCPVRKQVQRCAEDKTILITTYEGNHNHP 311 7*********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence
MDAGDDHMHR FNLYSSPSHH DHKPLNEMDF FANNDLHHQS NFNDDDNSDH LHHNINTGLH 60 LLTRNTNNDD QSVPDDGMSM NCEDKQTKNK LADVQVELEK MNTENQRLKQ VLDQVTSNYN 120 SLQMHMTTMM KQKQEEKPND DRKPSKDGGG DMVMVPRPLT DLGLAAPATV DTDENSRSSS 180 EGRSHDEIPR SPNTNIDGRD RREHSPEQVL GCSNKVPRLN DSKNDDNIDQ ATEATIRKAR 240 VSVRVRSEAP MITDGCQWRK YGQKMAKGSP FPRAYYRCTM AVGCPVRKQV QRCAEDKTIL 300 ITTYEGNHNH PLPPAAMAIS STTSSAARML LSGSMPSSDG IINSNFLATT LLPCSSGMAT 360 ISASAPFPTV TLDLTQQQMF SGQNAALLPQ IFGQGLYNQS KFSGLQSSQD TVAGTLSEMN 420 QGPSRAALAD TVTALTNNPN FTAALAVAIS SILGGGGGGG DDGSHPNSAV NNTIYGNNNN 480 GSVATRNDKD KKSCFRGN

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence

MDAGDDHMHR FNLYSSPSHH DHKPLNEMDF FANNDLHHQS NFNDDDNSDH LHHNINTGLH  60
LLTRNTNNDD QSVPDDGMSM NCEDKQTKNK LADVQVELEK MNTENQRLKQ VLDQVTSNYN  120
SLQMHMTTMM KQKQEEKPND DRKPSKDGGG DMVMVPRPLT DLGLAAPATV DTDENSRSSS  180
EGRSHDEIPR SPNTNIDGRD RREHSPEQVL GCSNKVPRLN DSKNDDNIDQ ATEATIRKAR  240
VSVRVRSEAP MITDGCQWRK YGQKMAKGSP FPRAYYRCTM AVGCPVRKQV QRCAEDKTIL  300
ITTYEGNHNH PLPPAAMAIS STTSSAARML LSGSMPSSDG IINSNFLATT LLPCSSGMAT  360
ISASAPFPTV TLDLTQQQMF SGQNAALLPQ IFGQGLYNQS KFSGLQSSQD TVAGTLSEMN  420
QGPSRAALAD TVTALTNNPN FTAALAVAIS SILGGGGGGG DDGSHPNSAV NNTIYGNNNN  480
GSVATRNDKD KKSCFRGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-115	WRKY family protein