PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024959776.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 267aa MW: 29095.7 Da PI: 10.5405

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024959776.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	80.1	2.3e-25	189	247	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+W+KYG K++ gs++pr YY+C + gCp++k+ve + +d k++ +tY geH+h+ XP_024959776.1 189 ADDYSWKKYGEKKIDGSPYPRVYYKCNTGkGCPARKRVELALDDSKMLLVTYDGEHQHR 247 69**********************8776**************************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence
MAVDCVGVQT VEHLSRMFQL TGHDFNVSSN FKHPVKRTGH ARFRRGPPPS STDSQGTSTS 60 SQSEEKQQDV SKECFSNKST SSRSTSSSSM VSSLLGGGSE GSVSNGKQFS SLGIVAPAPT 120 FSSRKPPLPS THRKRCSADR PTASLHGSGR ENHSVSRSGC HCCKRRKIGS KREIRRVPII 180 GSKVTSIPAD DYSWKKYGEK KIDGSPYPRV YYKCNTGKGC PARKRVELAL DDSKMLLVTY 240 DGEHQHRHHH APTPVPTSLT GLAVQSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24570.1	2e-38	WRKY family protein