PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024959801.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 254aa    MW: 28789.9 Da    PI: 6.6448
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024959801.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.4e-1160107455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ah   Er+RR+++++ f+ L  llP++     +K + ++i+ +A+ YI  Lq
  XP_024959801.1  60 AHLWTERQRRKKMRTMFHDLHALLPQL----PPKAEMSTIVDEAISYITTLQ 107
                     56668*********************6....3899999***********998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MGERDGEVGF FWAMADNSNS GASSEDKSTV VNKLPDDHSP INQPHDIGSG DIQPVDDHAA  60
HLWTERQRRK KMRTMFHDLH ALLPQLPPKA EMSTIVDEAI SYITTLQETL KDLEIQKLKR  120
LNNRESFLAD HGSITTCTHF DIISRPFSKI FPAVWCSPIV FRTWTSSNIT LNVCGPDAHI  180
SICSSRKRGL LTAICVVLEK HNLEIVSAHI SSDRYKSMFM IHVRVNVGDE LMKIFPYDEV  240
YKLAALEIML WVNS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-43bHLH family protein