PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024959904.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 182aa MW: 20612.8 Da PI: 6.5135

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024959904.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.1	2.7e-31	119	177	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+YYrC+ +gCpvkk+ver+ ed ++v++tYeg Hnhe XP_024959904.1 119 LDDGFKWRKYGKKMVKNSPNPRNYYRCSAQGCPVKKRVERDVEDARYVITTYEGVHNHE 177 59********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence
MDGYEEMSKA YSYRSLDSPV DYDVPNHQSS ELFDSFLVFD DWLNEDQASI VPEYPGHTPV 60 YPSAAIEDGN HSIGSSSSSS HLQGNSSMFL LLGGIGIRQA QKGTKEKVAF KTKSQVEILD 120 DGFKWRKYGK KMVKNSPNPR NYYRCSAQGC PVKKRVERDV EDARYVITTY EGVHNHERPS 180 NF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	7e-40	WRKY family protein