PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024959905.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 177aa MW: 20094.1 Da PI: 6.7946

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024959905.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.2	2.5e-31	114	172	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+YYrC+ +gCpvkk+ver+ ed ++v++tYeg Hnhe XP_024959905.1 114 LDDGFKWRKYGKKMVKNSPNPRNYYRCSAQGCPVKKRVERDVEDARYVITTYEGVHNHE 172 59********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence
MDGYEEMSKA YSYRSLDSPV DYDVPNHQSS ELFDSFLVFD DWLNEDQASI VPEYPGHTPV 60 YPSAAIEDGN HSIGSSSSSS HLQGNSSRGI GIRQAQKGTK EKVAFKTKSQ VEILDDGFKW 120 RKYGKKMVKN SPNPRNYYRC SAQGCPVKKR VERDVEDARY VITTYEGVHN HERPSNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	7e-40	WRKY family protein