PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024959929.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family WRKY
Protein Properties Length: 558aa    MW: 60786.8 Da    PI: 7.7519
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024959929.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.66.8e-30220277260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgse+prsYY+Ct+++C+vkk  ers   ++++ei+Y+g+H+h+k
  XP_024959929.1 220 DDGYNWRKYGQKVVKGSEHPRSYYKCTHPNCEVKKIFERSY-TGQITEIVYKGTHDHPK 277
                     8****************************************.9**************85 PP
2WRKY104.36.7e-33394452159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v+g+++prsYY+CtsagC+v+k+ver+++dpk+v++ Yeg+Hnh+
  XP_024959929.1 394 LDDGYRWRKYGQKVVRGNPNPRSYYKCTSAGCTVRKHVERASHDPKAVITAYEGKHNHD 452
                     59********************************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    
MDDQHSPHSH SSTTTSNGDG GRQGGGDAVG VGSTAGGGGG AKYKLMSPAK LPISRSTCIT  60
IPPGLSPTSF LESPVLLTNM KAEPSPTTGS FFKSSLMQRS IGTAAYSLEA NCSARKALDD  120
SNSGFFEFRP HSQSTSATQI SSGGFQVSAC SNLQRGEPSG QYQNQSEPRS YGSPSAARWE  180
MASPKEQSLT APAYMPCEDT NGSGKPKDSG PAIQVDRSSD DGYNWRKYGQ KVVKGSEHPR  240
SYYKCTHPNC EVKKIFERSY TGQITEIVYK GTHDHPKPQP SRRFSAGALM SIQEENSDKV  300
QYPTYQAGLS ANNGQNPNFE ASGTPVQSPR QANQDSTDGS VRQLNRTNDE VDDDDDPYLK  360
KRRTDFSALD VTPVVKPIRE PRVVVQTTSE VDILDDGYRW RKYGQKVVRG NPNPRSYYKC  420
TSAGCTVRKH VERASHDPKA VITAYEGKHN HDVPIMKNSS HDATICGISR TRSEETDALC  480
LDLVVGNRIP DQPQPQNAAT LHSQVHVSNS NFRKVVHWND VYGTTTDNDV EGCNVDSTTL  540
NHSSNPYPQN LGRILLGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12026GGRQGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-149WRKY family protein