PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024959998.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 220aa    MW: 23792.7 Da    PI: 5.3004
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024959998.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-192877356
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    ++GVr ++ +g++vAeIrdp +   ++r++lg+f++ae+Aa+a++aa+++l+g+
  XP_024959998.1 28 FRGVRKRP-WGKYVAEIRDPLK---KARVWLGTFDSAEDAARAYDAAARNLRGA 77
                    8*******.**********743...5*************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MRGGKAAPAS QAALPVTVGP GSGTEIRFRG VRKRPWGKYV AEIRDPLKKA RVWLGTFDSA  60
EDAARAYDAA ARNLRGAKAK TNFALTIGST AQNQQNPNGH HPFFDGDTEH QIIIPQMPTC  120
SSLSSTVESF SGPRPLMKAD VVLPPVQNRQ THPVVVDTCC DYCDSSSSVV VDEESDAGDI  180
VSSSFQKTLL PFDLNMPPPL DEVTIEASID DDLHCTELRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.16e-38ERF family protein