PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024960125.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NF-YA
Protein Properties Length: 278aa    MW: 31524.5 Da    PI: 8.3955
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024960125.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.76.9e-32155211158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d p+YVNaKQy++Il+RRq Rakle+++kl  k+r+pylheSRhkhAl+R RgsgGrF
  XP_024960125.1 155 DGPIYVNAKQYHGILRRRQIRAKLEAQNKL-VKNRRPYLHESRHKHALNRIRGSGGRF 211
                     57****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MPNFTQHLCF LLPSSRSQSL KMVPAPHLPA DTNDPTQQTC NQDSSTCHST DQSHKDDDIA  60
TQGVHPQDQC ISSSSDESYK KLEEAQMKPI LFMANPGISM NDLQVEKDIP MAQHAYADHY  120
LNGLYTPYGP QPIIQPHIVQ IAPARVPLPL DLSEDGPIYV NAKQYHGILR RRQIRAKLEA  180
QNKLVKNRRP YLHESRHKHA LNRIRGSGGR FLPTKKPQQS RAMRFLNSHC ASGYEEPHVS  240
ATDHERCHIA SRDMMMDHGL SWGIRGNEEH HHRGSMGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.23e-34NF-YA family protein