PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960144.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bZIP

Protein Properties

Length: 372aa MW: 41228.4 Da PI: 9.4979

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960144.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.6	1.6e-14	295	344	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +r +r++kNRe+A rsR+RK+a++ eLe +v++L++ N++L+k+ ee+ + XP_024960144.1 295 RRRKRMIKNRESAARSRARKQAYTLELEAEVAKLKELNHELQKKQEEIME 344 689****************************************9998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MISAMSSYIN FKNCGQMAAN SPLTQQSSIY ALTLDELQTT LGGGGKDFGS MNMDELLKNI 60 WTAEETQSLT SSSRTLSQKT VDEVWRELHK ENGGHGGFGE VGLIKEADLQ PQQKQPALGE 120 MTLEEFLQKA GVVAEKPQIQ PNGRHWNDGL FGDDGSGFAF GFKNPNQNQR FHQQTVVIEG 180 KNEVDNLQGV RSSQPPKPPK LFPKQAAFNF SSSQVNNAQL GNSINGVSVI GKTDHLINTS 240 MVQAKAVGGH MSRSPPDLFP NSNLDTSPSP PAYGYGEGGV QEKRRGGPLE KVVERRRKRM 300 IKNRESAARS RARKQAYTLE LEAEVAKLKE LNHELQKKQE EIMESQNFQM PEKMKLWGSR 360 GLCLRRTLTG PW

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MISAMSSYIN FKNCGQMAAN SPLTQQSSIY ALTLDELQTT LGGGGKDFGS MNMDELLKNI  60
WTAEETQSLT SSSRTLSQKT VDEVWRELHK ENGGHGGFGE VGLIKEADLQ PQQKQPALGE  120
MTLEEFLQKA GVVAEKPQIQ PNGRHWNDGL FGDDGSGFAF GFKNPNQNQR FHQQTVVIEG  180
KNEVDNLQGV RSSQPPKPPK LFPKQAAFNF SSSQVNNAQL GNSINGVSVI GKTDHLINTS  240
MVQAKAVGGH MSRSPPDLFP NSNLDTSPSP PAYGYGEGGV QEKRRGGPLE KVVERRRKRM  300
IKNRESAARS RARKQAYTLE LEAEVAKLKE LNHELQKKQE EIMESQNFQM PEKMKLWGSR  360
GLCLRRTLTG PW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	283	299	KRRGGPLEKVVERRRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	5e-40	bZIP family protein