PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024960219.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C2H2
Protein Properties Length: 258aa    MW: 27644.6 Da    PI: 8.8174
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024960219.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023157179123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C++sF++   L  H r+H
  XP_024960219.1 157 HECSICHRSFPTGQALGGHKRRH 179
                     78*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MALEALNSPA TTTTAAAPPP SFHYNFPTTT VIQDSWNKGK RSKRPRTTTS ADSASDVTHP  60
TESPHPTEEE YLAFCLMLLS RGTTAATTVQ SPPLPPLHQS VSHKCSVCNK GFSSYQALGG  120
HKASHRKNVP DDHPSTSATT TASASASSAL KPSGRSHECS ICHRSFPTGQ ALGGHKRRHY  180
DGNNPGSGVT TSEKTTSSTH SQPRNFDLNL PAFPEFQLGL NVDCVKKSQL SFNEQEVESP  240
HPAKKQRAAI IAGDVPNY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.19e-42C2H2 family protein