PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024960271.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 238aa    MW: 26248.2 Da    PI: 8.0216
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024960271.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-203787155
             AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++y+GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa+++l+g
  XP_024960271.1 37 PRYRGVRKRP-WGRFAAEIRDpWK----KARVWLGTFDSAEDAARAYDAAARSLRG 87
                    68********.**********883....5*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MVMRRGSRAK AAAAAGVPIG SRPEVVAVAQ QPDNNEPRYR GVRKRPWGRF AAEIRDPWKK  60
ARVWLGTFDS AEDAARAYDA AARSLRGSKA KTNFPFLPLP ENEIHDRTTG DHLKNQHQNF  120
YDLQSVNNKC RPTMSSLSST VESTSGPRPP PPPPPSNPIR TTHHRLKPPP VPHDDDDCHS  180
NCDSSSSVVD DHYHDADLAS SSRKPLPFDL NLPPPPPVDG IGFPSNPNDD LYVTELCL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.11e-23ERF family protein