PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960289.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 340aa MW: 38415.5 Da PI: 7.3372

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960289.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.9	3.6e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+d+++++G+g +W + ++++g +R++k+c++rw++yl XP_024960289.1 14 KGPWSPEEDAKLKDYIEKYGTGgNWIALPQKIGIKRCGKSCRLRWLNYL 62 79*****************************55**********97 PP
2	Myb_DNA-binding	37.6	5.2e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ XP_024960289.1 69 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE KYGTGGNWIA LPQKIGIKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR 120 RKQSHASRLT GSTQDPKTGN GLETLSSSAI ERLQLHMQLQ SLENPNIPHC ANLTMWPCKL 180 NPIQEKMMQS LQLLNESSNP LMMQHVLPDS PQKVELYGQI NNCPQQVYSP QSNIMINQME 240 GSINGINIPG SSMQVPESEG TKQPSMELQQ FWALQAEIDE FLSNKAANSV LLDQAQTNEF 300 DCFKDMDGAK DIMTWWSNEF NANSASSNSW DSYGVLDRQQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	3e-89	MYB family protein