PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960296.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 254aa MW: 28756.9 Da PI: 6.7793

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960296.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.1	1.3e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l + ++ +G+g +W + +++ g++R++k+c++rw++yl XP_024960296.1 14 RGPWSPEEDTILRNHIQNHGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	41.6	2.8e-13	71	111	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +T+eEd+++ + G++ W+ Ia+++ gRt++++k++w++ XP_024960296.1 71 FTEEEDDIISSLYVNIGSR-WSVIASHLR-GRTDNDVKNHWNT 111 9****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence
MGRSPCCDKS KVKRGPWSPE EDTILRNHIQ NHGTGGNWIA LPHKAGLKRC GKSCRLRWLN 60 YLRPDIKLGG FTEEEDDIIS SLYVNIGSRW SVIASHLRGR TDNDVKNHWN TKLKKKLSSS 120 YNSTTTTTTT TATMTTSINL MRCSDPTTLL PKQEADYYQT IPKPIFDDSM NVADYQQPMM 180 ISNSNDANFN DNVSSFQENQ GSSPNAFLMG NNYASWRDNG DGMTNSDGDF LLEDFDFRQV 240 ISEVANFNHS SQWF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36890.1	2e-68	MYB family protein