PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960403.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HB-other

Protein Properties

Length: 644aa MW: 72305.2 Da PI: 8.7964

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960403.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.1	1.9e-10	411	455	9	53
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +e +e L +F+kn ps++ +e+L+k+lgL+ ++V WF+N R+ XP_024960403.1 411 SEAVEKLRLVFAKNELPSRAVKEDLSKQLGLDLEKVNKWFKNARY 455 678999*************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence
MTGAETKEAP ENIGKLVHLQ SSTPKSYAKR SRKLKPHGNT LSSPMSKKKL VDLLTNSKKK 60 EFKRRNASNK ASKSLSKPSL VSCQNQKKQL AATGSNENEK CEKGDPTSEK FKQRRKRKRT 120 NNKVEVDEAS RLQRRTRYLL IKMKIEQNLL DAYSTEGWKG QSREKIKPEK ELQRAKKQIL 180 KCKLGIRDAL RQLDLLSSDG CIDESVIAPD GSVHHEHIFK VEATLPDGGN TLLNQEEWPS 240 DDSGDDDYDP DRVEKRDSSC SRVCSEGESC DDDASSSYSL QSLDVKALDD ESQKLDMGLE 300 SISADLIGAV SGSGSDCEFV SGRRQRQAVD YRKLYDEMFG KDALANEQAS EDEDWGPTNR 360 KRREKESDAA STLMTLCETE EKSVKDVPDT SKVDTNLSCK ETKRSFFRIP SEAVEKLRLV 420 FAKNELPSRA VKEDLSKQLG LDLEKVNKWF KNARYLSLKT KRAGEENPTQ NDGISISKES 480 GSEPAKNEAI DEILSEDMPT TLAHTPGNGH MKKFRRRKNP QSPTSTAKQQ QVEREFNLTT 540 STNKVDGNED LGDDDLSLKM LRENVKKEKI RAVDIGGSSE GDDQQAVAAA ESQMEKLCFL 600 KTKMEKLKQV LLLRTPNRRA KTTATSIDHT NTIFVPVAHL KEKH

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence

MTGAETKEAP ENIGKLVHLQ SSTPKSYAKR SRKLKPHGNT LSSPMSKKKL VDLLTNSKKK  60
EFKRRNASNK ASKSLSKPSL VSCQNQKKQL AATGSNENEK CEKGDPTSEK FKQRRKRKRT  120
NNKVEVDEAS RLQRRTRYLL IKMKIEQNLL DAYSTEGWKG QSREKIKPEK ELQRAKKQIL  180
KCKLGIRDAL RQLDLLSSDG CIDESVIAPD GSVHHEHIFK VEATLPDGGN TLLNQEEWPS  240
DDSGDDDYDP DRVEKRDSSC SRVCSEGESC DDDASSSYSL QSLDVKALDD ESQKLDMGLE  300
SISADLIGAV SGSGSDCEFV SGRRQRQAVD YRKLYDEMFG KDALANEQAS EDEDWGPTNR  360
KRREKESDAA STLMTLCETE EKSVKDVPDT SKVDTNLSCK ETKRSFFRIP SEAVEKLRLV  420
FAKNELPSRA VKEDLSKQLG LDLEKVNKWF KNARYLSLKT KRAGEENPTQ NDGISISKES  480
GSEPAKNEAI DEILSEDMPT TLAHTPGNGH MKKFRRRKNP QSPTSTAKQQ QVEREFNLTT  540
STNKVDGNED LGDDDLSLKM LRENVKKEKI RAVDIGGSSE GDDQQAVAAA ESQMEKLCFL  600
KTKMEKLKQV LLLRTPNRRA KTTATSIDHT NTIFVPVAHL KEKH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	63	KRSRKLKPHGNTLSSPMSKKKLVDLLTNSKKKEFK
2	114	119	RRKRKR
3	114	144	RRKRKRTNNKVEVDEASRLQRRTRYLLIKMK
4	115	145	RRKRKRTNNKVEVDEASRLQRRTRYLLIKMK
5	116	146	RRKRKRTNNKVEVDEASRLQRRTRYLLIKMK
6	360	365	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	4e-46	HB-PHD family protein