PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024960434.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NF-YB
Protein Properties Length: 158aa    MW: 17181.3 Da    PI: 6.3485
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024960434.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB156.64.2e-49398297
           NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                     e+d++lP+anv+rimk++lP  akisk+aket+qec+sefisfvt+easdkc++e+rkt+ngdd++wal++lGf+dy +++  yl+k+re+e+e+
  XP_024960434.1  3 DEHDKLLPVANVGRIMKRILPPTAKISKEAKETIQECASEFISFVTGEASDKCHKENRKTVNGDDICWALGSLGFDDYSQAIGGYLHKHREFERER 98
                    689******************************************************************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    
MVDEHDKLLP VANVGRIMKR ILPPTAKISK EAKETIQECA SEFISFVTGE ASDKCHKENR  60
KTVNGDDICW ALGSLGFDDY SQAIGGYLHK HREFERERAS AAAASSSAAL AASNQIQIAN  120
SIDQATVGCK GQLSYPANSP LEFRSLMEKG QTSHTEPL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.12e-52NF-YB family protein