PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960471.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 347aa MW: 38390 Da PI: 6.5003

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960471.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	49.9	5e-16	272	296	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tGtC+yGd+C+FaHg XP_024960471.1 272 KTELCNKWQETGTCPYGDNCHFAHG 296 9***********************8 PP
2	zf-CCCH	21.1	5.6e-07	309	334	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr +++ +C+yG rC+F H+ XP_024960471.1 309 YKTEVCRMVLAGDICPYGHRCHFRHS 334 9********55********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MEKKEIGSST DNDGGNLSGN LFLSPSASHN DQLEFDFSSG ELFNPASFCT SIFPPKFIPQ 60 SQLSFSSPSD CSFDDDAFSA NAIATENRLS QASFILEYQQ LYNCYTMCLA SLQDSVKEVD 120 ALRQENEALR LANNDLLQRL NLFSQASMQN CLVSSVRPSP SPSSTLVGDF NRLGIGAGFC 180 ESNASVEKVP SVSPTSVIEP KQFARHNGER VSMPKSISVR SRGYLKSVSS QRPSRQQATT 240 ALLGQSQRVR VPGEKKSGEG LEFEVYNQGM SKTELCNKWQ ETGTCPYGDN CHFAHGISEL 300 RPVIRHPRYK TEVCRMVLAG DICPYGHRCH FRHSLTEEEM LLAVNPR

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MEKKEIGSST DNDGGNLSGN LFLSPSASHN DQLEFDFSSG ELFNPASFCT SIFPPKFIPQ  60
SQLSFSSPSD CSFDDDAFSA NAIATENRLS QASFILEYQQ LYNCYTMCLA SLQDSVKEVD  120
ALRQENEALR LANNDLLQRL NLFSQASMQN CLVSSVRPSP SPSSTLVGDF NRLGIGAGFC  180
ESNASVEKVP SVSPTSVIEP KQFARHNGER VSMPKSISVR SRGYLKSVSS QRPSRQQATT  240
ALLGQSQRVR VPGEKKSGEG LEFEVYNQGM SKTELCNKWQ ETGTCPYGDN CHFAHGISEL  300
RPVIRHPRYK TEVCRMVLAG DICPYGHRCH FRHSLTEEEM LLAVNPR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	2e-69	C3H family protein