PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960504.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 433aa MW: 46496.1 Da PI: 9.516

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960504.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5e-06	200	222	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cgk F ++nL++H + H XP_024960504.1 200 TCHKCGKQFGKWENLETHHLSkH 222 7*****************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MPTVWFSLKK SLHCKSEPSD VHDPKSKKHL ATILTRKPGR SGCSRSIANL KDVIHGGSKR 60 HSEKPVSCSP RSIGSSEFLN PITHEVILSD SRCELKITGF GGGFHDGSGG GGGGGGAAAS 120 GGDGSTFVGT LMPGTPGPGG GHPTMHNFKN QQRRTLSNSL DGNGIANSGH FTGKNGIGMP 180 QKPRVSLETE SYGSSAGTVT CHKCGKQFGK WENLETHHLS KHAVTELMEG DSSRKIVEII 240 CRSSWLKSEN SSVRIEKVLK VHNMQKTLAR FEEYRELVKT KASKLPKKHP RCLADGNELL 300 RFYGTTIACS LGINGDSSLC ISDKCCVCRI IRNGFSTTKE LKGGVGVFTT STSARAFESI 360 EVSDDGPDTR RALMVCRVIA GRVHRPLENI QEIAGQSGFD SLAGKVGLHL NIEDLYLLSP 420 KALLPCFVVI CKL

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MPTVWFSLKK SLHCKSEPSD VHDPKSKKHL ATILTRKPGR SGCSRSIANL KDVIHGGSKR  60
HSEKPVSCSP RSIGSSEFLN PITHEVILSD SRCELKITGF GGGFHDGSGG GGGGGGAAAS  120
GGDGSTFVGT LMPGTPGPGG GHPTMHNFKN QQRRTLSNSL DGNGIANSGH FTGKNGIGMP  180
QKPRVSLETE SYGSSAGTVT CHKCGKQFGK WENLETHHLS KHAVTELMEG DSSRKIVEII  240
CRSSWLKSEN SSVRIEKVLK VHNMQKTLAR FEEYRELVKT KASKLPKKHP RCLADGNELL  300
RFYGTTIACS LGINGDSSLC ISDKCCVCRI IRNGFSTTKE LKGGVGVFTT STSARAFESI  360
EVSDDGPDTR RALMVCRVIA GRVHRPLENI QEIAGQSGFD SLAGKVGLHL NIEDLYLLSP  420
KALLPCFVVI CKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-167	C2H2 family protein