PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960638.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 366aa MW: 39093.9 Da PI: 8.6457

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960638.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.2	1e-11	54	79	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C f++rtG C yG++C+F+H+ XP_024960638.1 54 PGEPDCIFYLRTGMCGYGNSCRFNHP 79 5789*********************9 PP
2	zf-CCCH	35.6	1.6e-11	98	122	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCk+G++Ck++H++ XP_024960638.1 98 EPDCVYFLKTGTCKFGSTCKYNHPR 122 789********************96 PP
3	zf-CCCH	33.8	5.7e-11	143	167	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++ rtG Ck+G CkF+H++ XP_024960638.1 143 EKACPHYIRTGSCKFGVACKFHHPQ 167 578********************97 PP
4	zf-CCCH	37.8	3.1e-12	237	263	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++Cr+f+ tG CkyG+ Ck++H++ XP_024960638.1 237 PGEPECRYFMNTGNCKYGSDCKYHHPK 263 5799*********************96 PP
5	zf-CCCH	32.7	1.3e-10	283	308	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++++ +G+Ck+G++Ck+ H+ XP_024960638.1 283 PGQAVCSYYSLYGICKFGPTCKYDHP 308 57899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MPDNRRVQRN GGVANSSSNP VHNIEEAVRP LRIQTDGKAD GTAMAGSMAY PDRPGEPDCI 60 FYLRTGMCGY GNSCRFNHPT HIGQANYLGG ELPERVGEPD CVYFLKTGTC KFGSTCKYNH 120 PRDRRGAGPV VLNMVGLPMR QEEKACPHYI RTGSCKFGVA CKFHHPQPSL DGSISYASTL 180 VPSSGSPPHI SGIGPTQGWS TYMGSLSPVS SASIFGGSGS IDQAYPLTSA SNLPERPGEP 240 ECRYFMNTGN CKYGSDCKYH HPKEKIAQMA ASSLGPLGLP LRPGQAVCSY YSLYGICKFG 300 PTCKYDHPLV GYSYNYGISM PIVDPSVFPY GGGRHSSAAS SPSKRKGGSR SPSPENAASP 360 SHSGSI

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MPDNRRVQRN GGVANSSSNP VHNIEEAVRP LRIQTDGKAD GTAMAGSMAY PDRPGEPDCI  60
FYLRTGMCGY GNSCRFNHPT HIGQANYLGG ELPERVGEPD CVYFLKTGTC KFGSTCKYNH  120
PRDRRGAGPV VLNMVGLPMR QEEKACPHYI RTGSCKFGVA CKFHHPQPSL DGSISYASTL  180
VPSSGSPPHI SGIGPTQGWS TYMGSLSPVS SASIFGGSGS IDQAYPLTSA SNLPERPGEP  240
ECRYFMNTGN CKYGSDCKYH HPKEKIAQMA ASSLGPLGLP LRPGQAVCSY YSLYGICKFG  300
PTCKYDHPLV GYSYNYGISM PIVDPSVFPY GGGRHSSAAS SPSKRKGGSR SPSPENAASP  360
SHSGSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	9e-90	C3H family protein