PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960681.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

AP2

Protein Properties

Length: 499aa MW: 55176.6 Da PI: 7.3406

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960681.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.2	1.1e-14	162	221	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g XP_024960681.1 162 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 221 57*****************666664477446******99***********98 PP
2	AP2	47.3	5.1e-15	264	315	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_024960681.1 264 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 315 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence
MNMDSSQSHH QNQNNNWLAF SLSNSNTLFQ QPPPTAFHHH PEGDHATGTT TSRHDLSILT 60 GGSPKLEDFL GGCGSAASSG SGPDVCHFPD ESQSSMQPHD AASIYDSDLK TIAATFLRGF 120 STDNHHHLHQ QLAVAPTPTP PPPPQDNPPA KKAIDTFGQR TSIYRGVTRH RWTGRYEAHL 180 WDNSCRREGQ SRKGRQVYLG GYDKEDKAAR AYDLAALKYW GPTTTTNFPV CNYEKELEEM 240 KNMTRQEFVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE 300 EAAEAYDIAA IKFRGLNAVT NFDMSRYDVN SIANKNLPIG GMCSKSKTSM DQSRLDPNQR 360 SDERDLSSST SQPQPQPQPS NILSFAMPMK PDPSADYWTS VLGYNQNQQM SSSSYQGTTP 420 YSMEYPSSTS YYNGGGLVEQ ENNNNGTGVA LSTTSTIPMA TPMGLNGSSY GNWIEQSFHS 480 NQPGKQNLSV FQTPIFGME

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence

MNMDSSQSHH QNQNNNWLAF SLSNSNTLFQ QPPPTAFHHH PEGDHATGTT TSRHDLSILT  60
GGSPKLEDFL GGCGSAASSG SGPDVCHFPD ESQSSMQPHD AASIYDSDLK TIAATFLRGF  120
STDNHHHLHQ QLAVAPTPTP PPPPQDNPPA KKAIDTFGQR TSIYRGVTRH RWTGRYEAHL  180
WDNSCRREGQ SRKGRQVYLG GYDKEDKAAR AYDLAALKYW GPTTTTNFPV CNYEKELEEM  240
KNMTRQEFVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE  300
EAAEAYDIAA IKFRGLNAVT NFDMSRYDVN SIANKNLPIG GMCSKSKTSM DQSRLDPNQR  360
SDERDLSSST SQPQPQPQPS NILSFAMPMK PDPSADYWTS VLGYNQNQQM SSSSYQGTTP  420
YSMEYPSSTS YYNGGGLVEQ ENNNNGTGVA LSTTSTIPMA TPMGLNGSSY GNWIEQSFHS  480
NQPGKQNLSV FQTPIFGME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	1e-143	AP2 family protein