PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024960734.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 188aa    MW: 21005.4 Da    PI: 9.6543
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024960734.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.7e-11250455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    +h ++Er+RR+++N+ +  Lr++ P     + k+ + a+i   ++e+Ik++q
  XP_024960734.1  2 SHIAVERNRRRQMNEHLKVLRSMTPCF---YIKRGDQASIIGGVIEFIKEMQ 50
                    89************************9...9*******************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MSHIAVERNR RRQMNEHLKV LRSMTPCFYI KRGDQASIIG GVIEFIKEMQ QVLQSLESKK  60
RRRSISPSPG PSPKPILQPS TPQSERSTIV HENIKELGAS CNSPVADVEA KISGSNVVLR  120
TVSRRIPGQV VKIINMLENL SLEILHLNIS SMEDTVLYSF VIKIGLECQL SVEELAVEVQ  180
KSFSANLT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.15e-82bHLH family protein