PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960751.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 729aa MW: 80079.8 Da PI: 7.184

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960751.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.3	4.2e-06	428	451	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k Cr++++ G C+ G++CkF+H+ XP_024960751.1 428 KVTYCRHYLK-GRCHEGEKCKFSHD 451 7788****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 729 aa Download sequence
MVTIPPTEKS VMGTLENVSL PQTNPSTGSR RRGPLRSRTV DTLLRILSVC HAYSSNVNLD 60 SDKDGTNLGS VTKGDVPLAD TGTMPNDSVC QEEISGDETR RILSSQEGGL YSKHVESTGC 120 YDNTSGERKD LSCNVDTNPS NSFSIEDQDN YDSVFEDQDS FPMIPISLAD MMVSSPHLPI 180 DKDVEEGEIS GEFMDFMLDD DMASMDKTGL EPQDVIGIEP GHLIDNNLIS SATDTVDDVG 240 KDTVSVVSKS RRNLVDYSEI AINGIQAVNP ERLHGRLETA EETAGIESGC TPLCPEHVPP 300 LQSSLQNSAS KNQDCVSSVK DNRAQNNRKR QGSCTGEERT NKKGKKSIDA TTCSENQTML 360 GEHPEDASLE VTDASANKDD ADEKKKKRVL TKERKEKKKR KDRIKRAEKN RKLGVKRLKL 420 QPVIKEKKVT YCRHYLKGRC HEGEKCKFSH DTIPLTKSKP CCHFARHSCM KGDDCPFDHE 480 LSKYPCNNYI SKGFCSRGSD CMFSHEAQPS EAALNASNEP KTERKPSSLL DNSGSKKQNN 540 IDVSSREKIE KKSCSIPISV TTNTERNLVE STPKLSIQPP KGISFLSQEK PPLESRTSLK 600 VVADVVQDSK EITKTPLVVP RGINFLSFGK KPGLDHSDGG FSFKMVKGIG KSPLSIMEGE 660 SSKSDSTVKV NDGVKVDAKI GNNHNRQTNS QRPTLMLPFM SNSSQRALHS ALDFASDFVP 720 GVKGRGPKI

Sequence ? help Back to Top

Protein Sequence Length: 729 aa Download sequence

MVTIPPTEKS VMGTLENVSL PQTNPSTGSR RRGPLRSRTV DTLLRILSVC HAYSSNVNLD  60
SDKDGTNLGS VTKGDVPLAD TGTMPNDSVC QEEISGDETR RILSSQEGGL YSKHVESTGC  120
YDNTSGERKD LSCNVDTNPS NSFSIEDQDN YDSVFEDQDS FPMIPISLAD MMVSSPHLPI  180
DKDVEEGEIS GEFMDFMLDD DMASMDKTGL EPQDVIGIEP GHLIDNNLIS SATDTVDDVG  240
KDTVSVVSKS RRNLVDYSEI AINGIQAVNP ERLHGRLETA EETAGIESGC TPLCPEHVPP  300
LQSSLQNSAS KNQDCVSSVK DNRAQNNRKR QGSCTGEERT NKKGKKSIDA TTCSENQTML  360
GEHPEDASLE VTDASANKDD ADEKKKKRVL TKERKEKKKR KDRIKRAEKN RKLGVKRLKL  420
QPVIKEKKVT YCRHYLKGRC HEGEKCKFSH DTIPLTKSKP CCHFARHSCM KGDDCPFDHE  480
LSKYPCNNYI SKGFCSRGSD CMFSHEAQPS EAALNASNEP KTERKPSSLL DNSGSKKQNN  540
IDVSSREKIE KKSCSIPISV TTNTERNLVE STPKLSIQPP KGISFLSQEK PPLESRTSLK  600
VVADVVQDSK EITKTPLVVP RGINFLSFGK KPGLDHSDGG FSFKMVKGIG KSPLSIMEGE  660
SSKSDSTVKV NDGVKVDAKI GNNHNRQTNS QRPTLMLPFM SNSSQRALHS ALDFASDFVP  720
GVKGRGPKI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	384	401	KKKKRVLTKERKEKKKRK
2	384	405	KKKKRVLTKERKEKKKRKDRIK
3	385	402	KKKKRVLTKERKEKKKRK
4	385	406	KKKKRVLTKERKEKKKRKDRIK
5	386	403	KKKKRVLTKERKEKKKRK
6	394	402	RKEKKKRKD
7	397	427	KKKRKDRIKRAEKNRKLGVKRLKLQPVIKEK
8	398	428	KKKRKDRIKRAEKNRKLGVKRLKLQPVIKEK